Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
3,6-DI-4-PYRIDYL-1,2,4,5-TETRAZINE 3,6-DI-4-PYRIDYL-1,2,4,5-TETRAZINE 57654-36-1 C12H8N6
5-thien-2-yl-7-(trifluoromethyl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrimidine-2-carbohydrazide 5-thien-2-yl-7-(trifluoromethyl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrimidine-2-carbohydrazide 832739-24-9 C12H12F3N5OS
4,6-dibromo-2-methylpyrimidine 4,6-dibromo-2-methylpyrimidine 1598222-27-5 C5H4Br2N2
3-fluoro-4-(pyrrolidin-1-ylmethyl)benzaldehyde 3-fluoro-4-(pyrrolidin-1-ylmethyl)benzaldehyde 1443353-89-6 C12H14FNO
C-(1-BENZYL-PYRROLIDIN-3-YL)-METHYLAMINE C-(1-BENZYL-PYRROLIDIN-3-YL)-METHYLAMINE 93138-61-5 C12H18N2
6-bromo-5-methyl-1H-imidazo[4,5-b]pyridine 6-bromo-5-methyl-1H-imidazo[4,5-b]pyridine 28279-41-6 C7H6BrN3
(-)-Menthyl (+)-2-pyrrolidone-5-carboxylate (-)-Menthyl (+)-2-pyrrolidone-5-carboxylate 68127-22-0 C15H25NO3
N-(6-amino-1,2,3,4-tetrahydro-1-methyl-2,4-dioxo-5-pyrimidinyl)formamide N-(6-amino-1,2,3,4-tetrahydro-1-methyl-2,4-dioxo-5-pyrimidinyl)formamide 14785-95-6 C6H8N4O3
2,4,5-trimethylpyridine 2,4,5-trimethylpyridine 1122-39-0 C8H11N
4-methyloxazole 4-methyloxazole 693-93-6 C4H5NO
(S,R,S)-AHPC-PEG2-acid (S,R,S)-AHPC-PEG2-acid 2172820-09-4 C30H42N4O8S
ethyl 7-[(2R)-2-(hydroxymethyl)-5-oxo-1-pyrrolidinyl]heptanoate ethyl 7-[(2R)-2-(hydroxymethyl)-5-oxo-1-pyrrolidinyl]heptanoate 346672-97-7 C14H25NO4
Urea, N-[(3S,4R)-4-(3-fluorophenyl)-1-(2-methoxyethyl)-3-pyrrolidinyl]-N'-[4-methyl-3-(2-methyl-5-pyrimidinyl)-1-phenyl-1H-pyrazol-5-yl]- Urea, N-[(3S,4R)-4-(3-fluorophenyl)-1-(2-methoxyethyl)-3-pyrrolidinyl]-N'-[4-methyl-3-(2-methyl-5-pyrimidinyl)-1-phenyl-1H-pyrazol-5-yl]- 1824664-89-2 C29H32FN7O2
(S)-5-methyl-2-(pyrrolidin-2-yl)pyridine (S)-5-methyl-2-(pyrrolidin-2-yl)pyridine 1213645-44-3 C10H14N2
(S)-ALPHA,ALPHA-BIS(4-METHOXYPHENYL)-2-PYRROLIDINEMETHANOL (S)-ALPHA,ALPHA-BIS(4-METHOXYPHENYL)-2-PYRROLIDINEMETHANOL 131180-57-9 C19H23NO3
5-(Hydroxymethyl)-1-methyl-1H-pyrazole 5-(Hydroxymethyl)-1-methyl-1H-pyrazole 84547-61-5 C5H8N2O
2,2'-Bi-1H-imidazole, 4,4',5,5'-tetrahydro-4,4'-bis(1-methylethyl)-1,1'-bis(3-methylphenyl)-, (4S,4'S)- 2,2'-Bi-1H-imidazole, 4,4',5,5'-tetrahydro-4,4'-bis(1-methylethyl)-1,1'-bis(3-methylphenyl)-, (4S,4'S)- 2374958-85-5 C26H34N4
Pyrrolidine, 4-fluoro-2-methyl-, hydrochloride (1:1), (2R,4R)- Pyrrolidine, 4-fluoro-2-methyl-, hydrochloride (1:1), (2R,4R)- 2300174-87-0 C5H11ClFN
(S)-4,5-DIHYDRO-2-(2-((S)-4,5-DIHYDRO-4-ISOPROPYLOXAZOL-2-YL)PROPAN-2-YL)-4-ISOPROPYLOXAZOLE (S)-4,5-DIHYDRO-2-(2-((S)-4,5-DIHYDRO-4-ISOPROPYLOXAZOL-2-YL)PROPAN-2-YL)-4-ISOPROPYLOXAZOLE 131833-92-6 C15H26N2O2
3-Hydroxy-2-bromo-6-trifluoromethylpyridine 3-Hydroxy-2-bromo-6-trifluoromethylpyridine 1211526-50-9 C6H3BrF3NO
2-chloro-3-(trifluoromethyl)pyridine 1-oxide 2-chloro-3-(trifluoromethyl)pyridine 1-oxide 164464-57-7 C6H3ClF3NO
5-bromo-4-(2-fluoropropan-2-yl)pyrimidine 5-bromo-4-(2-fluoropropan-2-yl)pyrimidine 1823944-93-9 C7H8BrFN2
3-bromo-1-methyl-1H-Pyrrolo[2,3-c]pyridine 3-bromo-1-methyl-1H-Pyrrolo[2,3-c]pyridine 956003-06-8 C8H7BrN2
exo-8-boc-8-azabicyclo[3.2.1]octan-2-amine exo-8-boc-8-azabicyclo[3.2.1]octan-2-amine 1408074-65-6 C12H22N2O2
1-methyl-4-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)-1H-pyrazole 1-methyl-4-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)-1H-pyrazole 1607838-14-1 C16H21BN2O2
ETHYL 8-CHLORO-6-(TRIFLUOROMETHYL)IMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLATE ETHYL 8-CHLORO-6-(TRIFLUOROMETHYL)IMIDAZO[1,2-A]PYRIDINE-2-CARBOXYLATE 353258-31-8 C11H8ClF3N2O2
7-bromo-2-(1-methyl-1H-pyrazol-4-yl)Quinoxaline 7-bromo-2-(1-methyl-1H-pyrazol-4-yl)Quinoxaline 1083325-87-4 C12H9BrN4
1-methyl-4-aminoimidazole-2-carboxylic acid methyl ester hydrochloride 1-methyl-4-aminoimidazole-2-carboxylic acid methyl ester hydrochloride 480433-71-4 C6H10ClN3O2
5-(5-phenyl-4-((pyridin-2-ylmethyl)amino)quinazolin-2-yl)pyridine-3-sulfonamide 5-(5-phenyl-4-((pyridin-2-ylmethyl)amino)quinazolin-2-yl)pyridine-3-sulfonamide 1272353-82-8 C25H20N6O2S
1-Pyrrolidinecarboxylic acid, 2-[(5-bromo-1H-indol-3-yl)carbonyl]-, phenylmethyl ester, (S)- 1-Pyrrolidinecarboxylic acid, 2-[(5-bromo-1H-indol-3-yl)carbonyl]-, phenylmethyl ester, (S)- 199659-03-5 C21H19BrN2O3
3-Bromo-6-(trifluoromethyl)pyridine-2-carbaldehyde 3-Bromo-6-(trifluoromethyl)pyridine-2-carbaldehyde 1227573-28-5 C7H3BrF3NO
9-[1,1'-Biphenyl]-3-yl-9'-[1,1'-biphenyl]-4-yl-3,3'-bi-9H-carbazole 9-[1,1'-Biphenyl]-3-yl-9'-[1,1'-biphenyl]-4-yl-3,3'-bi-9H-carbazole 1643479-47-3 C48H32N2
N,N-Dimethyl-phosphoramidochloridic acid [(2S,6R)-6-(3,4-dihydro-5-methyl-2,4-dioxo-1(2H)-pyrimidinyl)-4-(triphenylmethyl)-2-morpholinyl]methyl ester N,N-Dimethyl-phosphoramidochloridic acid [(2S,6R)-6-(3,4-dihydro-5-methyl-2,4-dioxo-1(2H)-pyrimidinyl)-4-(triphenylmethyl)-2-morpholinyl]methyl ester 956139-30-3 C31H34ClN4O5P
6-chloro-1,3-dihydro-5-iodo-2H-Imidazo[4,5-b]pyridine-2-thione 6-chloro-1,3-dihydro-5-iodo-2H-Imidazo[4,5-b]pyridine-2-thione 1394373-25-1 C6H3ClIN3S
5-Trifluoromethyl-imidazo[1,2-a]pyridine-2-carbaldehyde 5-Trifluoromethyl-imidazo[1,2-a]pyridine-2-carbaldehyde 881841-26-5 C9H5F3N2O
Morpholine,4,4'-(phenylphosphinylidene)bis- (9CI) Morpholine,4,4'-(phenylphosphinylidene)bis- (9CI) 37624-67-2 C14H21N2O3P
5-(3-Nitrophenyl)-1-[3-(trifluoromethyl)phenyl]-1H-imidazole-2-thiol 5-(3-Nitrophenyl)-1-[3-(trifluoromethyl)phenyl]-1H-imidazole-2-thiol 1105189-24-9 C16H10F3N3O2S
Chloro[1,3-bis(adamantyl)2H-imidazol-2-ylidene]gold(I) Chloro[1,3-bis(adamantyl)2H-imidazol-2-ylidene]gold(I) 852445-88-6 C23H32AuClN2
1-(2-chloropyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one 1-(2-chloropyrimidin-4-yl)-3-methyl-1,3-dihydro-2H-benzo[d]imidazol-2-one 1835668-75-1 C12H9ClN4O
1,1'-(benzene-1,4-diyldimethylene)-bis(3,5-dimethyl-1H-pyrazole) 1,1'-(benzene-1,4-diyldimethylene)-bis(3,5-dimethyl-1H-pyrazole) 172606-22-3 C18H22N4
ETHYL 5-AMINO-1-(TERT-BUTYL)-1H-IMIDAZOLE-4-CARBOXYLATE ETHYL 5-AMINO-1-(TERT-BUTYL)-1H-IMIDAZOLE-4-CARBOXYLATE 76182-23-5 C10H17N3O2
2-CHLORO-4-BENZYLAMINO-5-METHYLPYRIMIDINE 2-CHLORO-4-BENZYLAMINO-5-METHYLPYRIMIDINE 91396-13-3 C12H12ClN3
(R)-5-AMINOMETHYL-PYRROLIDIN-2-ONE (R)-5-AMINOMETHYL-PYRROLIDIN-2-ONE 173336-98-6 C5H10N2O
4-bromothieno[3,2-d]pyrimidine 4-bromothieno[3,2-d]pyrimidine 16285-70-4 C6H3BrN2S
6-BROMO-2,4-DICHLOROQUINAZOLINE 6-BROMO-2,4-DICHLOROQUINAZOLINE 102393-82-8 C8H3BrCl2N2
Imidazo[1,2-a]pyridine-2-carboxaldehyde, 8-methyl- (9CI) Imidazo[1,2-a]pyridine-2-carboxaldehyde, 8-methyl- (9CI) 143982-39-2 C9H8N2O
Quinazoline, 4-methyl- (6CI,7CI,8CI,9CI) Quinazoline, 4-methyl- (6CI,7CI,8CI,9CI) 700-46-9 C9H8N2
3-Pyrrolidinol, 3-[(3-bromo-5-fluorophenyl)methyl]- 3-Pyrrolidinol, 3-[(3-bromo-5-fluorophenyl)methyl]- 1515119-28-4 C11H13BrFNO
1-Propanone, 1-(2-pyrimidinyl)- (9CI) 1-Propanone, 1-(2-pyrimidinyl)- (9CI) 54643-09-3 C7H8N2O
2-Pyrrolidinecarbonitrile, 1-(chloroacetyl)- (9CI) 2-Pyrrolidinecarbonitrile, 1-(chloroacetyl)- (9CI) 274901-37-0 C7H9ClN2O
1-(3,4-dimethyl-1H-pyrazol-1-yl)ethan-1-one 1-(3,4-dimethyl-1H-pyrazol-1-yl)ethan-1-one 856064-45-4 C7H10N2O
Sodium benzotriazole Sodium benzotriazole
Pyrrolidinone, dimethyl- Pyrrolidinone, dimethyl- 60544-40-3
7H-Pyrrolo[1,2-a]imidazol-7-one,5,6-dihydro-(9CI) 7H-Pyrrolo[1,2-a]imidazol-7-one,5,6-dihydro-(9CI) 112513-82-3 C6H6N2O
4-chloro-7-(4-methoxybenzyl)-6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidine 4-chloro-7-(4-methoxybenzyl)-6,7-dihydro-5H-pyrrolo[2,3-d]pyrimidine 853680-76-9 C14H14ClN3O
Benzonitrile, 5-formyl-2-(4-methyl-1H-imidazol-1-yl)- Benzonitrile, 5-formyl-2-(4-methyl-1H-imidazol-1-yl)- 1170735-10-0 C12H9N3O
6,8-Dibromo-imidazo[1,2-a]pyrazine-2-carboxylic acid ethyl ester 6,8-Dibromo-imidazo[1,2-a]pyrazine-2-carboxylic acid ethyl ester 87597-21-5 C9H7Br2N3O2
1-(difluoromethyl)-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole 1-(difluoromethyl)-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole 1206640-82-5 C10H15BF2N2O2
Ethyl 4-Chloro-6-methyl-2-(methylthio)pyrimidine-5-carboxylate Ethyl 4-Chloro-6-methyl-2-(methylthio)pyrimidine-5-carboxylate 583878-42-6 C9H11ClN2O2S
2-(chloromethyl)-9-methyl-4H-pyrido[1,2-a]pyrimidin-4-one(SALTDATA: FREE) 2-(chloromethyl)-9-methyl-4H-pyrido[1,2-a]pyrimidin-4-one(SALTDATA: FREE) 796067-44-2 C10H9ClN2O
5-(trifluoromethyl)-2,3-dihydrospiro[indene-1,2'-pyrrolidine] 5-(trifluoromethyl)-2,3-dihydrospiro[indene-1,2'-pyrrolidine] 1211594-38-5 C13H14F3N
8-bromoimidazo[1,2-a]pyridine-2-carboxylic acid 8-bromoimidazo[1,2-a]pyridine-2-carboxylic acid 1026201-45-5 C8H5BrN2O2
1-(2-Bromo-5-fluorophenyl)pyrrolidin-2-one 1-(2-Bromo-5-fluorophenyl)pyrrolidin-2-one 1280786-54-0 C10H9BrFNO
2,4-Dihydroxy-6,7-diMethoxyquinazoline 2,4-Dihydroxy-6,7-diMethoxyquinazoline 20197-80-2 C12H14N2O4
3-chloro-1H-pyrazole 3-chloro-1H-pyrazole 14339-33-4 C3H3ClN2
N-(5-iodo-2-oxo-1,2-dihydropyriMidin-4-yl)benzaMide N-(5-iodo-2-oxo-1,2-dihydropyriMidin-4-yl)benzaMide 145913-85-5 C11H8IN3O2
[2,2':6',2''-terpyridine]-6,6''-dicarboxylic acid [2,2':6',2''-terpyridine]-6,6''-dicarboxylic acid 149982-11-6 C17H11N3O4
6-broMo-3-iodoH-iMidazo[1,2-a]pyridine 6-broMo-3-iodoH-iMidazo[1,2-a]pyridine 474706-74-6 C7H4BrIN2
R-3-CBZ-AMINO PYRROLIDINE-HCL R-3-CBZ-AMINO PYRROLIDINE-HCL 884653-79-6 C12H17ClN2O2
3-Pyrrolidinamine,4-fluoro-,dihydrochloride,trans-(9CI) 3-Pyrrolidinamine,4-fluoro-,dihydrochloride,trans-(9CI) 125197-40-2 C4H9FN2.2ClH
1H-Benzimidazole,2-ethenyl-(9CI) 1H-Benzimidazole,2-ethenyl-(9CI) 14984-26-0 C9H8N2
2H-Imidazo[4,5-b]pyridin-2-one,5-amino-1,3-dihydro-(9CI) 2H-Imidazo[4,5-b]pyridin-2-one,5-amino-1,3-dihydro-(9CI) 40851-87-4 C6H6N4O
2-Pyrrolidineethanamine,1-methyl-,(2R)-(9CI) 2-Pyrrolidineethanamine,1-methyl-,(2R)-(9CI) 422545-96-8 C7H16N2
1H-Imidazo[4,5-c]pyridine,4-methoxy-(9CI) 1H-Imidazo[4,5-c]pyridine,4-methoxy-(9CI) 158089-18-0 C7H7N3O
1H-Pyrrolo[2,3-d]pyrimidine-5-carboxylicacid,2-amino-4,7-dihydro-4-oxo- 1H-Pyrrolo[2,3-d]pyrimidine-5-carboxylicacid,2-amino-4,7-dihydro-4-oxo- 92636-62-9 C7H6N4O3
3-Pyridinecarboxamide,2-amino-5-bromo-N-cyclopropyl-(9CI) 3-Pyridinecarboxamide,2-amino-5-bromo-N-cyclopropyl-(9CI) 781642-04-4 C9H10BrN3O
2,6-Pyridinediamine,1-oxide(9CI) 2,6-Pyridinediamine,1-oxide(9CI) 146538-81-0 C5H7N3O
3-Chloro-1,2,4-triazole 3-Chloro-1,2,4-triazole 6818-99-1 C2H2ClN3
(R)-(-)-1-Benzyl-3-aminopyrrolidine (R)-(-)-1-Benzyl-3-aminopyrrolidine 114715-39-8 C11H16N2
3,5-diphenyloxazole 3,5-diphenyloxazole 2039-49-8 C15H11NO
1-(4-Bromophenyl)-1H-pyrazole 1-(4-Bromophenyl)-1H-pyrazole 13788-92-6 C9H7BrN2
(S)-N-Phenyl-2-pyrrolidinecarboxamide (S)-N-Phenyl-2-pyrrolidinecarboxamide 64030-43-9 C11H14N2O
2,4-DICHLORO-6-FLUOROQUINAZOLINE 2,4-DICHLORO-6-FLUOROQUINAZOLINE 134517-57-0 C8H3Cl2FN2
6-Bromo-2-iodoquinazoline 6-Bromo-2-iodoquinazoline 882670-93-1 C8H4BrIN2
4-Trifluoromethyl-pyridine-2-carbaldehyde 4-Trifluoromethyl-pyridine-2-carbaldehyde 132470-83-8 C7H4F3NO
4-(Trifluoromethyl)pyridine-2-thiol 4-(Trifluoromethyl)pyridine-2-thiol 121307-79-7 C6H4F3NS
2H-PYRIMIDO[1,2-B]PYRIDAZIN, 2-CHLORO-7,8-DIMETHYL- 2H-PYRIMIDO[1,2-B]PYRIDAZIN, 2-CHLORO-7,8-DIMETHYL- 17412-26-9 C8H8ClN3
6-Aminoindazole 6-Aminoindazole 6967-12-0 C7H7N3
Azacyclotridecan-2-one Azacyclotridecan-2-one 947-04-6 C12H23NO
(S,S)-(-)-2,2'-ISOPROPYLIDENEBIS(4-TERT-BUTYL-2-OXAZOLINE) (S,S)-(-)-2,2'-ISOPROPYLIDENEBIS(4-TERT-BUTYL-2-OXAZOLINE) 131833-93-7 C17H30N2O2
4-(3-BROMO-PHENYL)-THIAZOL-2-YLAMINE 4-(3-BROMO-PHENYL)-THIAZOL-2-YLAMINE 105512-81-0 C9H7BrN2S
7-(4-tert-Butylphenyl)-2-methyl-1H-indene 7-(4-tert-Butylphenyl)-2-methyl-1H-indene 245653-52-5 C20H22
6-Methylimidazo[2,1-b]thiazole 6-Methylimidazo[2,1-b]thiazole 3835-41-4 C6H6N2S
2,4-Dimethylquinazoline 2,4-Dimethylquinazoline 703-63-9 C10H10N2
4-Methyl-6-ethoxypyrimidine-2-amine 4-Methyl-6-ethoxypyrimidine-2-amine 7749-48-6 C7H11N3O
5-NITRO-1H-BENZOIMIDAZOLE-2-CARBOXYLIC ACID 5-NITRO-1H-BENZOIMIDAZOLE-2-CARBOXYLIC ACID 73903-18-1 C8H5N3O4
1-ALLYLPYRIMIDINE-2,4(1H,3H)-DIONE 1-ALLYLPYRIMIDINE-2,4(1H,3H)-DIONE 25855-26-9 C7H8N2O2
2,4-DICHLORO-7-BROMOQUINAZOLINE 2,4-DICHLORO-7-BROMOQUINAZOLINE 959237-68-4 C8H3BrCl2N2
8-METHYLIMIDAZO[1,2-A]PYRIDINE 8-METHYLIMIDAZO[1,2-A]PYRIDINE 874-10-2 C8H8N2
3-Bromo-5-chloroimidazo[1,2-a]pyridine 3-Bromo-5-chloroimidazo[1,2-a]pyridine 1260656-94-7 C7H4BrClN2
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