Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
2-(4-TRIFLUOROMETHOXY-PHENYL)-PYRROLIDINE, HYDROCHLORIDE 2-(4-TRIFLUOROMETHOXY-PHENYL)-PYRROLIDINE, HYDROCHLORIDE 1185121-45-2 C11H13ClF3NO
2-(4-CHLOROBENZYLTHIO)-1H-BENZO[D]IMIDAZOLE 2-(4-CHLOROBENZYLTHIO)-1H-BENZO[D]IMIDAZOLE 23976-76-3 C14H11ClN2S
1-(TERT-BUTOXYCARBONYL)-2-PYRROLIDINONE 1-(TERT-BUTOXYCARBONYL)-2-PYRROLIDINONE 85909-08-6 C9H15NO3
Vanoxerine dihydrochloride Vanoxerine dihydrochloride 67469-78-7 C28H33ClF2N2O
1-(TRIMETHYLSILYL)-1H-BENZOTRIAZOLE 1-(TRIMETHYLSILYL)-1H-BENZOTRIAZOLE 43183-36-4 C9H13N3Si
5-(PYRIMIDIN-2-YLSULFANYL)-FURAN-2-CARBALDEHYDE 5-(PYRIMIDIN-2-YLSULFANYL)-FURAN-2-CARBALDEHYDE 57603-82-4 C9H6N2O2S
2-[4-(5-BROMOPYRIMIDIN-2-YL)PIPERAZIN-1-YL]ETHANOL 2-[4-(5-BROMOPYRIMIDIN-2-YL)PIPERAZIN-1-YL]ETHANOL 849021-42-7 C10H15BrN4O
2,6-bis[(4R,5R)-4,5-dihydro-4,5-diphenyl-1H-imidazol-2-yl]-Pyridine 2,6-bis[(4R,5R)-4,5-dihydro-4,5-diphenyl-1H-imidazol-2-yl]-Pyridine 863491-46-7 C35H29N5
3-AMINO-5-(METHYLTHIO)PYRAZOLE-4-CARBONITRILE 3-AMINO-5-(METHYLTHIO)PYRAZOLE-4-CARBONITRILE 72760-85-1 C5H6N4S
4-(PYRIMIDIN-2-YL)BROMOBENZENE 4-(PYRIMIDIN-2-YL)BROMOBENZENE 210354-17-9 C10H7BrN2
8-METHYL-2-PHENYL-IMIDAZO[1,2-A]PYRIDINE-3-CARBOXALDEHYDE 8-METHYL-2-PHENYL-IMIDAZO[1,2-A]PYRIDINE-3-CARBOXALDEHYDE 524724-72-9 C15H12N2O
(S)-ALPHA-(4-IODO-BENZYL)-PROLINE-HCL (S)-ALPHA-(4-IODO-BENZYL)-PROLINE-HCL 1217613-78-9 C12H15ClINO2
4-Iodo-1H-imidazole-2-carboxylic acid 4-Iodo-1H-imidazole-2-carboxylic acid 1824286-45-4 C4H3IN2O2
imidazo[2,1-b][1,3]thiazol-3-ylmethanol imidazo[2,1-b][1,3]thiazol-3-ylmethanol 130182-36-4 C6H6N2OS
4-[[(1-propyl-1H-imidazol-5-yl)methyl]sulfinyl]Benzenamine 4-[[(1-propyl-1H-imidazol-5-yl)methyl]sulfinyl]Benzenamine 597583-07-8 C13H17N3OS
5-(pyrimidin-5-yl)isophthalic acid 5-(pyrimidin-5-yl)isophthalic acid 1417570-15-0 C12H8N2O4
5-chloro-3H-imidazo[4,5-b]pyridine-2-thiol 5-chloro-3H-imidazo[4,5-b]pyridine-2-thiol 40851-97-6 C6H4ClN3S
BIS(2-FURYL)CHLOROPHOSPHINE BIS(2-FURYL)CHLOROPHOSPHINE 181257-35-2 C8H6ClO2P
PPT PPT 263717-53-9 C24H22N2O3
6-FLUOROPYRIDINE-2-SULFONYL CHLORIDE 6-FLUOROPYRIDINE-2-SULFONYL CHLORIDE 128583-07-3 C5H3ClFNO2S
BENZO[4,5]IMIDAZO[1,2-A][1,3,5]TRIAZIN-2-YLAMINE BENZO[4,5]IMIDAZO[1,2-A][1,3,5]TRIAZIN-2-YLAMINE 61678-05-5 C9H7N5
METHYL 2-(METHYLTHIO)PYRIMIDINE-4-CARBOXYLATE METHYL 2-(METHYLTHIO)PYRIMIDINE-4-CARBOXYLATE 64224-67-5 C7H8N2O2S
1-[(3S)-3-PYRROLIDINYL]-PIPERIDINE DIHYDROCHLORIDE 1-[(3S)-3-PYRROLIDINYL]-PIPERIDINE DIHYDROCHLORIDE 917505-12-5 C9H19ClN2
2,4-Dichloro-7-cyanoquinazoline 2,4-Dichloro-7-cyanoquinazoline 864292-40-0 C9H3Cl2N3
Pyrrolidine,  2-[bis[3,5-bis(trifluoromethyl)phenyl][(trimethylsilyl)oxy]methyl]-,  (2R)- Pyrrolidine, 2-[bis[3,5-bis(trifluoromethyl)phenyl][(trimethylsilyl)oxy]methyl]-, (2R)- 908303-26-4 C24H23F12NOSi
2,4,6-Trichloro-pyrido[3,2-d]pyrimidine 2,4,6-Trichloro-pyrido[3,2-d]pyrimidine 1036738-12-1 C7H2Cl3N3
3-Amino-1-methylpiperidine dihydrochloride 3-Amino-1-methylpiperidine dihydrochloride 894808-73-2 C6H15ClN2
(3S,4R)-1-benzyl-4-(4-fluorophenyl)pyrrolidine-3-carboxylic acid (3S,4R)-1-benzyl-4-(4-fluorophenyl)pyrrolidine-3-carboxylic acid 80909-49-5 C18H18FNO2
(R)-2-hydroxy-N,N-dimethyl-3-(2-(1-(5-methylfuran-2-yl)propylamino)-3,4-dioxocyclobut-1-enylamino)benzamide (R)-2-hydroxy-N,N-dimethyl-3-(2-(1-(5-methylfuran-2-yl)propylamino)-3,4-dioxocyclobut-1-enylamino)benzamide 473727-83-2 C21H23N3O5
1-Pyrrolidinecarboxaldehyde, 2-oxo- 1-Pyrrolidinecarboxaldehyde, 2-oxo- 40321-44-6 C5H7NO2
6-chloropyrido[3,2-d]pyrimidin-4(3H)-one 6-chloropyrido[3,2-d]pyrimidin-4(3H)-one 171178-33-9 C7H4ClN3O
4-broMo-2-(2,6-dichlorophenyl)-7-fluoro-1H-iMidazo[4,5-c]pyridine 4-broMo-2-(2,6-dichlorophenyl)-7-fluoro-1H-iMidazo[4,5-c]pyridine 1334411-83-4 C12H5BrCl2FN3
5-BroMo-2-chloro-6-MethylpyriMidin-4-aMine 5-BroMo-2-chloro-6-MethylpyriMidin-4-aMine 54093-23-1 C5H5BrClN3
3-(BroMoMethyl)-1H-pyrrolo[2,3-b]pyridine 3-(BroMoMethyl)-1H-pyrrolo[2,3-b]pyridine 1174007-40-9 C8H7BrN2
2-Chloro-4-(trifluoromethyl)nicotinonitrile 2-Chloro-4-(trifluoromethyl)nicotinonitrile 896447-72-6 C7H2ClF3N2
3-fluoro-6,7-dihydro-5H-pyrrolo[3,4-b]pyridine hydrochloride 3-fluoro-6,7-dihydro-5H-pyrrolo[3,4-b]pyridine hydrochloride 1346808-65-8 C7H8ClFN2
TribroMocyanuric acid TribroMocyanuric acid 17497-85-7 C3Br3N3O3
2-PYRROLIDIN-2-YLPYRIDINE 2-PYRROLIDIN-2-YLPYRIDINE 22083-78-9 C9H12N2
1-(3-HydroxyMethyl-pyrrolidin-1-yl)-ethanone 1-(3-HydroxyMethyl-pyrrolidin-1-yl)-ethanone 191347-96-3 C7H13NO2
Isopropyl-(4-Methyl-pyriMidin-2-yl)-aMine Isopropyl-(4-Methyl-pyriMidin-2-yl)-aMine 1341073-92-4 C8H13N3
Ethyl 4-Methyl-2-(Methylthio)-6-oxo-1,6-dihydropyriMidine-5-carboxylate Ethyl 4-Methyl-2-(Methylthio)-6-oxo-1,6-dihydropyriMidine-5-carboxylate 344361-90-6 C9H12N2O3S
5-(2-AMinopropyl)indole 5-(2-AMinopropyl)indole 3784-30-3 C11H14N2
IMidazo[1,2-a]pyridin-8-aMine, 7-broMo- IMidazo[1,2-a]pyridin-8-aMine, 7-broMo- 1357945-44-8 C7H6BrN3
1,3-Pyrrolidinedicarboxylic acid, 4-oxo-, 1-(1,1-diMethylethyl) 3-Methyl ester 1,3-Pyrrolidinedicarboxylic acid, 4-oxo-, 1-(1,1-diMethylethyl) 3-Methyl ester 194924-95-3 C11H17NO5
6-isopropylquinazoline 6-isopropylquinazoline 1059158-62-1 C11H12N2
(2S,4S)-1-(tert-Butoxycarbonyl)-4-(4-(3-methyl-1-phenyl-1H-pyrazol-5-yl)piperazin-1-yl)pyrrolidine-2-carboxylic acid (2S,4S)-1-(tert-Butoxycarbonyl)-4-(4-(3-methyl-1-phenyl-1H-pyrazol-5-yl)piperazin-1-yl)pyrrolidine-2-carboxylic acid 1821705-03-6 C24H33N5O4
(2S,5S)-1-(((9H-Fluoren-9-yl)methoxy)carbonyl)-5-phenylpyrrolidine-2-carboxylic acid (2S,5S)-1-(((9H-Fluoren-9-yl)methoxy)carbonyl)-5-phenylpyrrolidine-2-carboxylic acid 1219953-60-2 C26H23NO4
(2S)-3-(decyloxy)-2-({[(9H-fluoren-9-yl)methoxy]carbonyl}amino)propanoic acid (2S)-3-(decyloxy)-2-({[(9H-fluoren-9-yl)methoxy]carbonyl}amino)propanoic acid 1013997-51-7 C22H23NO4
(R)-4-Oxopyrrolidine-2-carboxylic acid (R)-4-Oxopyrrolidine-2-carboxylic acid 911284-93-0 C5H7NO3
Pyridine, 2,5-bis(2,3-difluorophenyl)- Pyridine, 2,5-bis(2,3-difluorophenyl)- 1261483-09-3 C17H9F4N
2,4(1H,3H)-Pyrimidinedione, 1-(4-bromophenyl)dihydro- 2,4(1H,3H)-Pyrimidinedione, 1-(4-bromophenyl)dihydro- 90772-28-4 C10H9BrN2O2
4-chloro-6-methyl-5H,6H,7H,8H-pyrido[4,3-d]pyrimidine 4-chloro-6-methyl-5H,6H,7H,8H-pyrido[4,3-d]pyrimidine 1258650-41-7 C8H10ClN3
Thiazolo[5,4-d]pyrimidin-5-amine, 7-chloro- Thiazolo[5,4-d]pyrimidin-5-amine, 7-chloro- 1211527-74-0 C5H3ClN4S
6-Bromo-1H-indole 6-Bromo-1H-indole 52415-29-9 C8H6BrN
2-Pyrrolidinone,3-(hydroxymethyl)-1-methyl-(9CI) 2-Pyrrolidinone,3-(hydroxymethyl)-1-methyl-(9CI) 577780-05-3 C6H11NO2
1H-Imidazole-1-aceticacid,alpha,2-dimethyl-(9CI) 1H-Imidazole-1-aceticacid,alpha,2-dimethyl-(9CI) 782414-84-0 C7H10N2O2
1H-1,2,4-Triazol-3-amine,5-bromo-(9CI) 1H-1,2,4-Triazol-3-amine,5-bromo-(9CI) 389122-08-1 C2H3BrN4
1H-Benzimidazole-2-methanol,5-chloro-1-methyl-(9CI) 1H-Benzimidazole-2-methanol,5-chloro-1-methyl-(9CI) 380177-22-0 C9H9ClN2O
2-Pyridinecarboxamide,N-2-pyrimidinyl-(9CI) 2-Pyridinecarboxamide,N-2-pyrimidinyl-(9CI) 848308-21-4 C10H8N4O
1-(3-CHLOROPHENYL)IMIDAZOLE 1-(3-CHLOROPHENYL)IMIDAZOLE 51581-52-3 C9H7ClN2
2-Quinazolinamine 2-Quinazolinamine 1687-51-0 C8H7N3
1H-Benzimidazole-6-carboxaldehyde, 1-methyl- (9CI) 1H-Benzimidazole-6-carboxaldehyde, 1-methyl- (9CI) 181867-19-6 C9H8N2O
(S)-2-AMINOMETHYL-1-N-CBZ-PYRROLIDINE
(S)-2-AMINOMETHYL-1-N-CBZ-PYRROLIDINE 141774-68-7 C13H18N2O2
Hexamethylol melamine Hexamethylol melamine C9H22N6O6
2,2'-Bioxazole, 4,4',5,5'-tetrahydro-4,4'-di-2-naphthalenyl-, (4S,4'S)- 2,2'-Bioxazole, 4,4',5,5'-tetrahydro-4,4'-di-2-naphthalenyl-, (4S,4'S)- 2567868-01-1 C26H20N2O2
A549/FU A549/FU
ethyl 5-nitro-2,6-dioxo-3H-pyrimidine-4-carboxylate ethyl 5-nitro-2,6-dioxo-3H-pyrimidine-4-carboxylate 52047-16-2 C7H7N3O6
2-Methylindoline 2-Methylindoline 6872-06-6 C9H11N
OXO-PYRROLIDIN-1-YL-ACETIC ACID OXO-PYRROLIDIN-1-YL-ACETIC ACID 49791-37-9 C6H9NO3
4-(1H-imidazol-1-yl)pyridine 4-(1H-imidazol-1-yl)pyridine 25700-16-7 C8H7N3
2-Bromo-1-methyl-1H-imidazole-4-carboxylic  acid 2-Bromo-1-methyl-1H-imidazole-4-carboxylic acid 852181-03-4 C5H5BrN2O2
5-(BROMOMETHYL)OXAZOLE 5-(BROMOMETHYL)OXAZOLE 127232-42-2 C4H4BrNO
CHEMBRDG-BB 4003804 CHEMBRDG-BB 4003804 99858-80-7 C11H15NO
4-chloro-5-methoxy-2-(4-pyridinyl)pyrimidine 4-chloro-5-methoxy-2-(4-pyridinyl)pyrimidine 133661-38-8 C10H8ClN3O
5,6,7,8-Tetrahydro-imidazo[1,2-a]pyrazine-2-carboxylic acid ethyl ester 5,6,7,8-Tetrahydro-imidazo[1,2-a]pyrazine-2-carboxylic acid ethyl ester 91476-82-3 C9H13N3O2
ethyl 4-amino-5-methylthieno[2,3-d]pyrimidine-6-carboxylate ethyl 4-amino-5-methylthieno[2,3-d]pyrimidine-6-carboxylate 60598-74-5 C10H11N3O2S
3,3'-Bi(1H-pyrazole) 3,3'-Bi(1H-pyrazole) 2384-02-3 C6H6N4
CHEMBRDG-BB 6423830 CHEMBRDG-BB 6423830 83490-13-5 C13H10N2O2
1-CBZ-3-HYDROXYMETHYLPYRROLIDINE 1-CBZ-3-HYDROXYMETHYLPYRROLIDINE 315718-05-9 C13H17NO3
tert-butyl octahydro-1H-pyrrolo[3,2-b]pyridine-1-carboxylate tert-butyl octahydro-1H-pyrrolo[3,2-b]pyridine-1-carboxylate 1211586-14-9 C12H22N2O2
1-Methyl-5-oxo-L-Proline 1-Methyl-5-oxo-L-Proline 52574-06-8 C6H9NO3
3-(5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinolin-1-yl)-4-(1H-indol-3-yl)pyrrolidine-2,5-dione 3-(5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinolin-1-yl)-4-(1H-indol-3-yl)pyrrolidine-2,5-dione 1239986-50-5 C23H19N3O2
5-chloro-7-(3,4-diMethoxyphenyl)iMidazo[1,2-c]pyriMidine 5-chloro-7-(3,4-diMethoxyphenyl)iMidazo[1,2-c]pyriMidine 371171-20-9 C14H12ClN3O2
BenzaMide, N-[2-[[(3R,4R)-1-[cis-4-(1,3-benzodioxol-5-yl)-4-hydroxycyclohexyl]-4-ethoxy-3-pyrrolidinyl]aMino]-2-oxoethyl]-3-(trifluoroMethyl)-, rel- BenzaMide, N-[2-[[(3R,4R)-1-[cis-4-(1,3-benzodioxol-5-yl)-4-hydroxycyclohexyl]-4-ethoxy-3-pyrrolidinyl]aMino]-2-oxoethyl]-3-(trifluoroMethyl)-, rel- 1285539-85-6 C29H34F3N3O6
2,4-Dichloro-6-isopropyl-5,6-dihydropyrrolo[3,4-d]pyriMidin-7-one 2,4-Dichloro-6-isopropyl-5,6-dihydropyrrolo[3,4-d]pyriMidin-7-one 1079649-94-7 C9H9Cl2N3O
(2-BENZOTHIAZOLYLTHIO)ACETIC ACID (2-BENZOTHIAZOLYLTHIO)ACETIC ACID 6295-57-4 C9H7NO2S2
3-[[3,5-bis(trifluoroMethyl)phenyl]aMino]-4-[[(1S,2S)-2-(1-pyrrolidinyl)cyclohexyl]aMino]- 3-[[3,5-bis(trifluoroMethyl)phenyl]aMino]-4-[[(1S,2S)-2-(1-pyrrolidinyl)cyclohexyl]aMino]- 1211565-10-4 C22H23F6N3O2
2,5-Pyrrolidinedione, 3-(5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinolin-1-yl)-4-(1H-indol-3-yl)-, (3R,4R)-rel- 2,5-Pyrrolidinedione, 3-(5,6-dihydro-4H-pyrrolo[3,2,1-ij]quinolin-1-yl)-4-(1H-indol-3-yl)-, (3R,4R)-rel- 905853-99-8 C23H19N3O2
CyclopentaneMethanol, 4-(4-chloro-7H-pyrrolo[2,3-d]pyriMidin-7-yl)-2-hydroxy-, (1S,2S,4R)- CyclopentaneMethanol, 4-(4-chloro-7H-pyrrolo[2,3-d]pyriMidin-7-yl)-2-hydroxy-, (1S,2S,4R)- 1113025-27-6 C12H14ClN3O2
1-Ethyl-1H-iMidazole-5-carboxylic acid 1-Ethyl-1H-iMidazole-5-carboxylic acid 71925-11-6 C6H8N2O2
4-Hydroxy-6-Methyl-2-oxo-1,2-dihydro-pyridine-3-carbonitrile 4-Hydroxy-6-Methyl-2-oxo-1,2-dihydro-pyridine-3-carbonitrile 67643-17-8 C7H6N2O2
N-[3,5-bis(trifluoroMethyl)phenyl]-N'-[(1R,2R)-2-(1-pyrrolidinyl)cyclohexyl]-Thiourea N-[3,5-bis(trifluoroMethyl)phenyl]-N'-[(1R,2R)-2-(1-pyrrolidinyl)cyclohexyl]-Thiourea 1314743-49-1 C19H23F6N3S
L-Proline sodiuM salt L-Proline sodiuM salt 15383-56-9 C5H10NNaO2
1H-BenziMidazole-1-acetaMide, 2-phenyl-N-(phenylMethyl)-α-4-piperidinyl- 1H-BenziMidazole-1-acetaMide, 2-phenyl-N-(phenylMethyl)-α-4-piperidinyl- 1440753-53-6 C27H28N4O
5-(Pyrrolidin-1-yl)pentan-1-aMine dihydrochloride 5-(Pyrrolidin-1-yl)pentan-1-aMine dihydrochloride 1624260-73-6 C9H22Cl2N2
(2S)-2-(3-BROMOPHENYL)PYRROLIDINE (2S)-2-(3-BROMOPHENYL)PYRROLIDINE 1217694-15-9 C10H12BrN
2-AMino-3-(pyrrolidin-3-yl)propanoic acid 2-AMino-3-(pyrrolidin-3-yl)propanoic acid 1313016-75-9 C7H14N2O2
6-Methoxy-iMidazo[1,2-b]pyridazine-2-carboxylic acid 6-Methoxy-iMidazo[1,2-b]pyridazine-2-carboxylic acid 64068-09-3 C8H7N3O3
1-Ethyl-3-methylimidazolium bis(fluorosulfonyl)imide 1-Ethyl-3-methylimidazolium bis(fluorosulfonyl)imide 235789-75-0 C6H11F2N3O4S2
4-Bromo-1-pyrrolidin-3-yl-1H-pyrazole 4-Bromo-1-pyrrolidin-3-yl-1H-pyrazole 1247439-25-3 C7H10BrN3
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