Heterocyclic Compounds

Heterocyclic compounds are a class of compounds that consist of carbon atoms and non-carbon atoms altogether forming a cyclic skeletal structure. These non-carbon atoms are collectively referred to as a heteroatom. The common heteroatoms include nitrogen, oxygen, and sulfur. Lactones, lactams, cyclic ethers that we’ve already learned are heterocyclic compounds. With similar properties of congeneric open-chain compounds, they will be discussed in corresponding chapters. This chapter will mainly discuss heterocyclic compounds with relatively stable ring system and with a certain degree of aromaticity, also known as aromatic heterocyclic compound.

There are many kinds and a large number of heterocyclic compounds widely distributed in nature. Many natural heterocyclic compounds in animals and plants play an important physiological role in the body. For example, heterocyclic structure exists in chlorophyll in plants, hemoglobin in animal blood, alkaloids and glycosides as the active ingredient in herbs, some antibiotics and vitamins, certain composition of amino acids in protein and bases in nucleotide. About half of the existing medicines have heterocyclic structures. Thus, heterocyclic compounds play an important role in organic compounds especially in organic medicines.

The most common and also the most important heterocyclic compounds are that with five-membered or six-membered heterocyclic ring and their fused heterocyclic compounds. Therefore, according to the size of the ring, heterocyclic compounds can be divided into five-membered compounds and six-membered heterocyclic compounds. E.g., furan, thiophene, pyrrole, imidazole, triazole and their fused heterocyclic compounds, indole, benzimidazole and diphenylene-oxide are all five-membered heterocyclic compounds, while pyridine, pyrimidine and their fused heterocyclic compounds, quinoline and quinazoline are all six-membered heterocyclic compounds.

According to the number of hetero atoms, five-membered compounds and six-membered heterocyclic compounds can be divided into one-hetero-atom-containing heterocyclic compounds and two-hetero-atom-containing and several-hetero-atom-containing heterocyclic compounds. E.g., furan, thiophene, pyridine, indole, quinoline, dibenzofuran, etc. are one-hetero-atom-containing heterocyclic compounds; imidazole, pyrimidine, benzimidazole, quinazoline, etc. are two-hetero-atom-containing heterocyclic compounds; purine, comprising more than two hetero atoms, is a several-hetero-atom-containing heterocyclic compound. According to the form of the ring in the molecule, heterocyclic compounds can be divided into single-heterocyclic compounds and fused heterocyclic compounds. E.g., furan, pyridine, pyrimidine, imidazole, etc. are single-heterocyclic compounds and indole, quinoline, dibenzofuran, purines, etc. are fused heterocyclic compounds.

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Structure Chemical Name CAS MF
FMoc-α-Me-D-Pro-OH FMoc-α-Me-D-Pro-OH 1286768-33-9 C21H21NO4
2-CHLORO-IMIDAZO[1,2-A]PYRIDINE-3-CARBOXYLIC ACID 2-CHLORO-IMIDAZO[1,2-A]PYRIDINE-3-CARBOXYLIC ACID 522604-25-7 C8H5ClN2O2
BOC-3-FLUORO-4-OXOPYRROLIDINE BOC-3-FLUORO-4-OXOPYRROLIDINE 845894-03-3 C9H14FNO3
3-ETHYL-4-IODO-1H-PYRAZOLE 3-ETHYL-4-IODO-1H-PYRAZOLE 442876-19-9 C5H7IN2
1-[2-(azetidin-1-yl)ethyl]-4-(tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole 1-[2-(azetidin-1-yl)ethyl]-4-(tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazole 1422126-12-2 C14H24BN3O2
7-Chloro-6-iodoimidazo[1,2-a]pyrimidin-5(1H)-one 7-Chloro-6-iodoimidazo[1,2-a]pyrimidin-5(1H)-one 1799434-64-2 C6H3ClIN3O
1-isopropylpyrimidine-2,4,6(1H,3H,5H)-trione 1-isopropylpyrimidine-2,4,6(1H,3H,5H)-trione 69998-14-7 C7H10N2O3
6-(3-methoxyphenyl)imidazo[2,1-b]thiazole 6-(3-methoxyphenyl)imidazo[2,1-b]thiazole 92754-06-8 C12H10N2OS
7-benzenesulfonyl-4-chloro-5-iodo-7H-pyrrolo[2,3-d]pyrimidine 7-benzenesulfonyl-4-chloro-5-iodo-7H-pyrrolo[2,3-d]pyrimidine 208459-84-1 C12H7ClIN3O2S
2-(4-(2H-tetrazol-5-yl)phenoxy)-5-chloro-3-fluoropyridine 2-(4-(2H-tetrazol-5-yl)phenoxy)-5-chloro-3-fluoropyridine 1799681-96-1 C12H7ClFN5O
1-Methylpyrrolidin-3-amine hydrochloride 1-Methylpyrrolidin-3-amine hydrochloride 1538307-77-5 C5H13ClN2
7-(4-Methoxybenzyl)-5-Methyl-3-(Phenylamino)-2H-Pyrazolo[3,4-D]Pyrimidine-4,6(5H,7H)-Dione 7-(4-Methoxybenzyl)-5-Methyl-3-(Phenylamino)-2H-Pyrazolo[3,4-D]Pyrimidine-4,6(5H,7H)-Dione 1160521-51-6 C20H19N5O3
3,3'-Methylenebis(1-tert-butyl-3-imidazolium Bromide) 3,3'-Methylenebis(1-tert-butyl-3-imidazolium Bromide) 247902-48-3 C15H26Br2N4
6-Methylimidazo[1,2-a]pyrimidine-3-carboxylic acid 6-Methylimidazo[1,2-a]pyrimidine-3-carboxylic acid 1020035-04-4 C8H7N3O2
1-(2-Methoxyethyl)-1-methylpyrrolidinium Bis(fluorosulfonyl)imide 1-(2-Methoxyethyl)-1-methylpyrrolidinium Bis(fluorosulfonyl)imide 1235234-47-5 C8H18F2N2O5S2
1-Methylimidazole 1-Methylimidazole 616-47-7 C4H6N2
2-Cyclopropyl-4-iodo-1-isopropyl-1H-imidazole 2-Cyclopropyl-4-iodo-1-isopropyl-1H-imidazole 824431-88-1 C9H13IN2
tert-butyl 3-[4-(tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazol-1-yl]pyrrolidine-1-carboxylate tert-butyl 3-[4-(tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-pyrazol-1-yl]pyrrolidine-1-carboxylate 1359974-18-7 C18H30BN3O4
4-CHLORO-6,7-DIETHOXY-QUINAZOLINE 4-CHLORO-6,7-DIETHOXY-QUINAZOLINE 162363-46-4 C12H13ClN2O2
trans-4-fluoro-3-hydroxypyrrolidine hydrochloride trans-4-fluoro-3-hydroxypyrrolidine hydrochloride 2006333-41-9 C4H9ClFNO
9,9'-Bis([1,1'-biphenyl]-3-yl)-3,3'-bi-9H-carbazole 9,9'-Bis([1,1'-biphenyl]-3-yl)-3,3'-bi-9H-carbazole 1352040-89-1 C48H32N2
7-Bromo-2,4-dichloropyrido[3,2-d]pyrimidine 7-Bromo-2,4-dichloropyrido[3,2-d]pyrimidine 1215074-41-1 C7H2BrCl2N3
Chloro[1,3-bis(2,4,6-trimethylphenyl)-4,5-dihydroimidazol-2-ylidene]gold(I) Chloro[1,3-bis(2,4,6-trimethylphenyl)-4,5-dihydroimidazol-2-ylidene]gold(I) 852445-82-0 C21H26AuClN2
4-Bromo-1,2-dimethyl-1H-benzo[d]imidazole 4-Bromo-1,2-dimethyl-1H-benzo[d]imidazole 1379361-12-2 C9H9BrN2
6-BROMO-2-CHLOROOXAZOLO[5,4-B]PYRIDINE 6-BROMO-2-CHLOROOXAZOLO[5,4-B]PYRIDINE 1782797-89-0 C6H2BrClN2O
1-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)pyrrolidin-2-one 1-(4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)phenyl)pyrrolidin-2-one 1003309-09-8 C16H22BNO3
2-(1H-Pyrazol-1-yl)-5-(trifluoromethyl)pyrimidine 2-(1H-Pyrazol-1-yl)-5-(trifluoromethyl)pyrimidine 1398504-38-5 C8H5F3N4
FHMKYTDEGLFVSL-UHFFFAOYSA-N FHMKYTDEGLFVSL-UHFFFAOYSA-N 76182-29-1 C6H7ClN2O2
(S)-Pyrrolidine-2-carbonitrile hydrochloride (S)-Pyrrolidine-2-carbonitrile hydrochloride 65732-69-6 C5H9ClN2
8-bromo-2-chloroimidazo[1,2-a]pyridine 8-bromo-2-chloroimidazo[1,2-a]pyridine 1260902-12-2 C7H4BrClN2
CHEMBRDG-BB 4010221 CHEMBRDG-BB 4010221 6857-34-7 C9H8N2S
N-CYANOACETYLPYRROLIDINE N-CYANOACETYLPYRROLIDINE 14227-95-3 C7H10N2O
1-Methylindole 1-Methylindole 603-76-9 C9H9N
4-(MORPHOLINOMETHYL)BENZYLAMINE 4-(MORPHOLINOMETHYL)BENZYLAMINE 91271-84-0 C12H18N2O
(6-Methyl-thieno[2,3-d]pyrimidin-4-yl)-hydrazine (6-Methyl-thieno[2,3-d]pyrimidin-4-yl)-hydrazine 439692-69-0 C7H8N4S
3-Indoleacetonitrile 3-Indoleacetonitrile 771-51-7 C10H8N2
4-(FMOC-AMINO)-1-METHYL-1H-IMIDAZOLE-2-CARBOXYLIC ACID 4-(FMOC-AMINO)-1-METHYL-1H-IMIDAZOLE-2-CARBOXYLIC ACID 252206-28-3 C20H17N3O4
5,5',5'',5'''-([2,2'-bi(1,3-dithiolylidene)]-4,4',5,5'-tetrayl)tetraisophthalic acid 5,5',5'',5'''-([2,2'-bi(1,3-dithiolylidene)]-4,4',5,5'-tetrayl)tetraisophthalic acid 2172997-02-1 C38H20O16S4
6-Methyl-2-nitro-6,7-dihydro-5H-imidazo[2,1-b][1,3]oxazin-6-ol 6-Methyl-2-nitro-6,7-dihydro-5H-imidazo[2,1-b][1,3]oxazin-6-ol 2222660-14-0 C7H9N3O4
5-(2,5-dimethyl-1H-pyrrol-1-yl)-1-methyl-1H-pyrazole 5-(2,5-dimethyl-1H-pyrrol-1-yl)-1-methyl-1H-pyrazole 34605-70-4 C10H13N3
7H-pyrrolo[2,3-d]pyrimidine-2-carboxylic acid 7H-pyrrolo[2,3-d]pyrimidine-2-carboxylic acid 1314723-98-2 C7H5N3O2
(S)-1-(2-(trifluoromethyl)pyrimidin-5-yl)ethan-1-amine (S)-1-(2-(trifluoromethyl)pyrimidin-5-yl)ethan-1-amine 1948237-00-0 C7H8F3N3
Imidazo[1,2-a]pyridine, 3-bromo-2-(4-
fluorophenyl)- Imidazo[1,2-a]pyridine, 3-bromo-2-(4- fluorophenyl)- 158958-74-8 C13H8BrFN2
1,2-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-imidazole 1,2-dimethyl-4-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)-1H-imidazole 2223050-13-1 C11H19BN2O2
phenyl (R)-(5-(2-(2,5-difluorophenyl)pyrrolidin-1-yl)pyrazolo[1,5-a]pyrimidin-3-yl)carbamate phenyl (R)-(5-(2-(2,5-difluorophenyl)pyrrolidin-1-yl)pyrazolo[1,5-a]pyrimidin-3-yl)carbamate 2135871-21-3 C23H19F2N5O2
2'-(Methylthio)-7',8'-dihydro-6'H-spiro[cyclohexane-1,9'-pyrazino[1',2':1,5]pyrrolo[2,3-d]pyrimidin]-6'-one 2'-(Methylthio)-7',8'-dihydro-6'H-spiro[cyclohexane-1,9'-pyrazino[1',2':1,5]pyrrolo[2,3-d]pyrimidin]-6'-one 2170747-00-7 C15H18N4OS
6,7-Dihydro-5H-imidazo[2,1-b][1,3]oxazin-6-ol 6,7-Dihydro-5H-imidazo[2,1-b][1,3]oxazin-6-ol 1557178-09-2 C6H8N2O2
1H-Imidazole, 1,1'-(oxydi-4,1-phenylene)bis- 1H-Imidazole, 1,1'-(oxydi-4,1-phenylene)bis- 13120-43-9 C18H14N4O
1H-Imidazole, 1,1'-(2,5-dimethyl-1,4-phenylene)bis- 1H-Imidazole, 1,1'-(2,5-dimethyl-1,4-phenylene)bis- 1347702-73-1 C14H14N4
4,6- diisopropylpyrimidin-5-amine 4,6- diisopropylpyrimidin-5-amine 2168417-89-6 C10H17N3
4,4'-Bi-1H-pyrazole 4,4'-Bi-1H-pyrazole 25240-33-9 C6H6N4
2,4,6-trichlorobenzimidazole 2,4,6-trichlorobenzimidazole 142356-47-6 C7H3Cl3N2
4-[(S)-4-Boc-2-methyl-1-piperazinyl]-6-fluoro-7-(2-fluoro-6-hydroxyphenyl)-1-(2-isopropyl-4-methyl-3-pyridyl)pyrido[2,3-d]pyrimidin-2(1H)-one 4-[(S)-4-Boc-2-methyl-1-piperazinyl]-6-fluoro-7-(2-fluoro-6-hydroxyphenyl)-1-(2-isopropyl-4-methyl-3-pyridyl)pyrido[2,3-d]pyrimidin-2(1H)-one 2252403-85-1 C32H36F2N6O4
2,2'-Bioxazole, 4,4'-bis(1,1-dimethylethyl)-4,4',5,5'-tetrahydro-, (4S,4'S)- 2,2'-Bioxazole, 4,4'-bis(1,1-dimethylethyl)-4,4',5,5'-tetrahydro-, (4S,4'S)- 135565-31-0 C14H24N2O2
2-Ethoxy-3-Bromo-5-Nitropyridine 2-Ethoxy-3-Bromo-5-Nitropyridine 74919-31-6 C7H7BrN2O3
Cyclohexanecarboxamide, N-[2-[(ethylsulfonyl)amino]-5-(trifluoromethyl)-3-pyridinyl]-, sodium salt, hydrate (1:1:1) Cyclohexanecarboxamide, N-[2-[(ethylsulfonyl)amino]-5-(trifluoromethyl)-3-pyridinyl]-, sodium salt, hydrate (1:1:1) 351999-87-6 C15H23F3N3NaO4S
Ethanone, 2,2,2-trifluoro-1-(1-methyl-1H-imidazol-2-yl)- (9CI) Ethanone, 2,2,2-trifluoro-1-(1-methyl-1H-imidazol-2-yl)- (9CI) 62366-56-7 C6H5F3N2O
Pyrrolidine, 2-[(3-bromo-2-thienyl)methyl]- Pyrrolidine, 2-[(3-bromo-2-thienyl)methyl]- 1342415-22-8 C9H12BrNS
4-chloro-2-methylquinazoline 4-chloro-2-methylquinazoline 6484-24-8 C9H7ClN2
2-Pyrimidinamine, 5-(trifluoromethyl)- (9CI) 2-Pyrimidinamine, 5-(trifluoromethyl)- (9CI) 69034-08-8 C5H4F3N3
4H-Pyrazolo[3,4-d]pyrimidin-4-one, 1,5-dihydro-6-methyl- (9CI) 4H-Pyrazolo[3,4-d]pyrimidin-4-one, 1,5-dihydro-6-methyl- (9CI) 30129-57-8 C6H6N4O
8-fluoro-2-methylimidazo[1,2-a]pyridine-6-carbonit 8-fluoro-2-methylimidazo[1,2-a]pyridine-6-carbonit
1-N-TRITYL-IMIDAZOLE-2-YLPROPIONIC ACID
1-N-TRITYL-IMIDAZOLE-2-YLPROPIONIC ACID 675602-85-4 C25H22N2O2
2,4-dichloro-5-ethylpyrimidine 2,4-dichloro-5-ethylpyrimidine C6H6Cl2N2
Methanethione, (4-methoxyphenyl)-1-pyrrolidinyl- Methanethione, (4-methoxyphenyl)-1-pyrrolidinyl- 80282-57-1 C12H15NOS
7-Bromoindole 7-Bromoindole 51417-51-7 C8H6BrN
4-Iodoimidazole 4-Iodoimidazole 71759-89-2 C3H3IN2
INDEX NAME NOT YET ASSIGNED INDEX NAME NOT YET ASSIGNED 1975129-29-3 C18H26BrN6+
1-Ethyl-3,5-dimethyl-1H-pyrazole 1-Ethyl-3,5-dimethyl-1H-pyrazole 17629-26-4 C7H12N2
3-Chloroimidazo[1,2-a]pyridine-2-carboxylic acid ethyl ester 3-Chloroimidazo[1,2-a]pyridine-2-carboxylic acid ethyl ester 1000017-95-7 C10H9ClN2O2
2H-Naphth[1,2-d]imidazol-2-one,5-amino-1,3-dihydro-(9CI) 2H-Naphth[1,2-d]imidazol-2-one,5-amino-1,3-dihydro-(9CI) 75370-64-8 C11H9N3O
1H-Pyrazole,5-bromo-1-methyl-(9CI) 1H-Pyrazole,5-bromo-1-methyl-(9CI) 361476-01-9 C4H5BrN2
(S)-3-Fluoro-pyrrolidine hydrochloride (S)-3-Fluoro-pyrrolidine hydrochloride 136725-53-6 C4H9ClFN
5-HYDROXYIMIDACLOPRID 5-HYDROXYIMIDACLOPRID 380912-09-4 C9H10ClN5O3
4-chloro-2-cyclopropylpyrimidine 4-chloro-2-cyclopropylpyrimidine 1044771-74-5 C7H7ClN2
4-CHLOROIMIDAZO/4,5-C/PYRIDINE AND ITS DERIVATIVES 4-CHLOROIMIDAZO/4,5-C/PYRIDINE AND ITS DERIVATIVES
7-BROMO-2,4,9-TRIAZABICYCLO[4.3.0]NONA-3,7,10-TRIEN-5-ONE 7-BROMO-2,4,9-TRIAZABICYCLO[4.3.0]NONA-3,7,10-TRIEN-5-ONE 22276-97-7 C6H4BrN3O
8-Bromo-6-methylimidazo[1,2-a]pyridine-3-carbaldehyde 8-Bromo-6-methylimidazo[1,2-a]pyridine-3-carbaldehyde 1033202-08-2 C9H7BrN2O
5-chloro-2-(trifluoromethyl)-3H-imidazo[4,5-b]pyridine 5-chloro-2-(trifluoromethyl)-3H-imidazo[4,5-b]pyridine 40851-96-5 C7H3ClF3N3
8-BROMO-2-CHLOROQUINAZOLINE 8-BROMO-2-CHLOROQUINAZOLINE 956100-63-3 C8H4BrClN2
ETHYL 6-BROMOIMIDAZO[1,2-A]PYRIMIDINE-2-CARBOXYLIC ACID ETHYL 6-BROMOIMIDAZO[1,2-A]PYRIMIDINE-2-CARBOXYLIC ACID 944896-67-7 C9H8BrN3O2
4-PYRROLIDIN-1-YLMETHYL-PHENYLAMINE 4-PYRROLIDIN-1-YLMETHYL-PHENYLAMINE 142335-64-6 C11H16N2
3,4-Dimethoxy-2-pyridinemethanol 3,4-Dimethoxy-2-pyridinemethanol 72830-08-1 C8H11NO3
4-chloro-6-(trifluoromethyl)quinazoline 4-chloro-6-(trifluoromethyl)quinazoline 16499-64-2 C9H4ClF3N2
Carbonylhydrido[6-(di-t-butylphosphinomethylene)-2-(N,N-diethylaminomethyl)-1,6-dihydropyridine]ruthenium(II), min. 98% Carbonylhydrido[6-(di-t-butylphosphinomethylene)-2-(N,N-diethylaminomethyl)-1,6-dihydropyridine]ruthenium(II), min. 98% 863971-63-5 C19H35N2PRu.CO
5-IODO-1H-PYRAZOLE 5-IODO-1H-PYRAZOLE 1007351-17-8 C3H3IN2
ETHYL 2-PHENYL-IMIDAZOLE-4-CARBOXYLATE ETHYL 2-PHENYL-IMIDAZOLE-4-CARBOXYLATE 32683-00-4 C12H12N2O2
6-CHLOROBENZIMIDAZOLE-4-CARBOXYLIC ACID 6-CHLOROBENZIMIDAZOLE-4-CARBOXYLIC ACID 180569-27-1 C8H5ClN2O2
5-CHLORO-7-METHOXYTHIENO[3,2-B]PYRIDINE 5-CHLORO-7-METHOXYTHIENO[3,2-B]PYRIDINE 90690-91-8 C8H6ClNOS
1-METHYL-1,2,3,6-TETRAHYDROPYRIDINE-4-BORONIC ACID PINACOL ESTER 1-METHYL-1,2,3,6-TETRAHYDROPYRIDINE-4-BORONIC ACID PINACOL ESTER 454482-11-2 C12H22BNO2
1-(3-BROMOPROPYL)PYRROLIDINE-2,5-DIONE 1-(3-BROMOPROPYL)PYRROLIDINE-2,5-DIONE 88661-56-7 C7H10BrNO2
Ethyl 5-(trifluoromethyl)imidazo[1,2-a]pyridine-2-carboxylate Ethyl 5-(trifluoromethyl)imidazo[1,2-a]pyridine-2-carboxylate 1260885-46-8 C11H9F3N2O2
7-methyl-2H,3H,4H-pyrido[1,2-a]pyrimidin-3-ol hydrochloride 7-methyl-2H,3H,4H-pyrido[1,2-a]pyrimidin-3-ol hydrochloride 6056-42-4 C9H12N2O.HCl
(2S,3S)-3-Hydroxypyrrolidine-2-carboxamide hydrochloride (2S,3S)-3-Hydroxypyrrolidine-2-carboxamide hydrochloride 426844-45-3 C5H11ClN2O2
(5,6,7,8-Tetrahydroimidazo[1,2-a]pyridin-7-yl)methanamine dihydrochloride (5,6,7,8-Tetrahydroimidazo[1,2-a]pyridin-7-yl)methanamine dihydrochloride 1803583-23-4 C8H14ClN3
7-Methoxy-5-(methylthio)-3H-[1,2,3]triazolo[4,5-d]pyrimidine 7-Methoxy-5-(methylthio)-3H-[1,2,3]triazolo[4,5-d]pyrimidine 1350563-51-7 C6H7N5OS
Imidazo[2,1-b]thiazol-5-ylmethanamine Imidazo[2,1-b]thiazol-5-ylmethanamine 933707-50-7 C6H7N3S
6-(Tert-butylthio)-7-methoxyimidazo[1,2-a]pyridine 6-(Tert-butylthio)-7-methoxyimidazo[1,2-a]pyridine 2141967-02-2 C12H16N2OS
6-((Tetrahydro-2H-pyran-2-yl)oxy)-6,7-dihydro-5H-imidazo[2,1-b][1,3]oxazine 6-((Tetrahydro-2H-pyran-2-yl)oxy)-6,7-dihydro-5H-imidazo[2,1-b][1,3]oxazine 2135831-65-9 C11H16N2O3
3-Nitro-4-phenylaminopyridine 3-Nitro-4-phenylaminopyridine
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